PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G329200.1
Common NameB456_009G329200, LOC105765789
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 417aa    MW: 46420.5 Da    PI: 8.1048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G329200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-065880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Gorai.009G329200.1 58 YVCEICSQGFQRDQNLQMHRRRH 80
                        9*********************9 PP

2zf-C2H215.26e-05135157123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C k +  +s++k H++t+
  Gorai.009G329200.1 135 WVCDKCRKGYAVQSDFKAHLKTC 157
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-55780No hitNo description
Gene3DG3DSA:3.30.160.605.8E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9075880IPR007087Zinc finger, C2H2
SMARTSM003550.0115880IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359060140IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035521099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4126156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.32E-5130155No hitNo description
SMARTSM0035568135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLGYTTSASA LPSSSSDPLS PLENGDTQKR KRKPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICSQGFQRD QNLQMHRRRH KVPWKLLKRE NQEVKKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS KQKQWVCDKC RKGYAVQSDF KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DSCSARRIQP ELLTAVLPSC SSRTAPSTSP SSDTNLNFSI APTGTPLPGL PMPWSTEPVF  240
LYSQAPILDY HRHHRLLQHD LELQLLPSSS AHSTWWNSDE NENRATNLKL SIGSSESVEM  300
IEANKLANAT ETALEALKEL AIAEKTYAEK ARLEAKRQIE MAELEFSSAK RIRQQAQSEL  360
EKAQALKDEA TKKINAIIMQ ITCGACKHQL RAATADDEAS LAMSYMSSAT TEGEGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440494.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-158IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A0D2QS330.0A0A0D2QS33_G
STRINGPOPTR_0010s11160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-113C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]